test_nanops.py 37.0 KB
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069
from functools import partial
import operator
import warnings

import numpy as np
import pytest

import pandas.util._test_decorators as td

from pandas.core.dtypes.common import is_integer_dtype

import pandas as pd
from pandas import Series, isna
import pandas._testing as tm
from pandas.core.arrays import DatetimeArray
import pandas.core.nanops as nanops

use_bn = nanops._USE_BOTTLENECK
has_c16 = hasattr(np, "complex128")


@pytest.fixture(params=[True, False])
def skipna(request):
    """
    Fixture to pass skipna to nanops functions.
    """
    return request.param


class TestnanopsDataFrame:
    def setup_method(self, method):
        np.random.seed(11235)
        nanops._USE_BOTTLENECK = False

        arr_shape = (11, 7)

        self.arr_float = np.random.randn(*arr_shape)
        self.arr_float1 = np.random.randn(*arr_shape)
        self.arr_complex = self.arr_float + self.arr_float1 * 1j
        self.arr_int = np.random.randint(-10, 10, arr_shape)
        self.arr_bool = np.random.randint(0, 2, arr_shape) == 0
        self.arr_str = np.abs(self.arr_float).astype("S")
        self.arr_utf = np.abs(self.arr_float).astype("U")
        self.arr_date = np.random.randint(0, 20000, arr_shape).astype("M8[ns]")
        self.arr_tdelta = np.random.randint(0, 20000, arr_shape).astype("m8[ns]")

        self.arr_nan = np.tile(np.nan, arr_shape)
        self.arr_float_nan = np.vstack([self.arr_float, self.arr_nan])
        self.arr_float1_nan = np.vstack([self.arr_float1, self.arr_nan])
        self.arr_nan_float1 = np.vstack([self.arr_nan, self.arr_float1])
        self.arr_nan_nan = np.vstack([self.arr_nan, self.arr_nan])

        self.arr_inf = self.arr_float * np.inf
        self.arr_float_inf = np.vstack([self.arr_float, self.arr_inf])

        self.arr_nan_inf = np.vstack([self.arr_nan, self.arr_inf])
        self.arr_float_nan_inf = np.vstack([self.arr_float, self.arr_nan, self.arr_inf])
        self.arr_nan_nan_inf = np.vstack([self.arr_nan, self.arr_nan, self.arr_inf])
        self.arr_obj = np.vstack(
            [
                self.arr_float.astype("O"),
                self.arr_int.astype("O"),
                self.arr_bool.astype("O"),
                self.arr_complex.astype("O"),
                self.arr_str.astype("O"),
                self.arr_utf.astype("O"),
                self.arr_date.astype("O"),
                self.arr_tdelta.astype("O"),
            ]
        )

        with np.errstate(invalid="ignore"):
            self.arr_nan_nanj = self.arr_nan + self.arr_nan * 1j
            self.arr_complex_nan = np.vstack([self.arr_complex, self.arr_nan_nanj])

            self.arr_nan_infj = self.arr_inf * 1j
            self.arr_complex_nan_infj = np.vstack([self.arr_complex, self.arr_nan_infj])

        self.arr_float_2d = self.arr_float
        self.arr_float1_2d = self.arr_float1

        self.arr_nan_2d = self.arr_nan
        self.arr_float_nan_2d = self.arr_float_nan
        self.arr_float1_nan_2d = self.arr_float1_nan
        self.arr_nan_float1_2d = self.arr_nan_float1

        self.arr_float_1d = self.arr_float[:, 0]
        self.arr_float1_1d = self.arr_float1[:, 0]

        self.arr_nan_1d = self.arr_nan[:, 0]
        self.arr_float_nan_1d = self.arr_float_nan[:, 0]
        self.arr_float1_nan_1d = self.arr_float1_nan[:, 0]
        self.arr_nan_float1_1d = self.arr_nan_float1[:, 0]

    def teardown_method(self, method):
        nanops._USE_BOTTLENECK = use_bn

    def check_results(self, targ, res, axis, check_dtype=True):
        res = getattr(res, "asm8", res)

        if (
            axis != 0
            and hasattr(targ, "shape")
            and targ.ndim
            and targ.shape != res.shape
        ):
            res = np.split(res, [targ.shape[0]], axis=0)[0]

        try:
            tm.assert_almost_equal(targ, res, check_dtype=check_dtype)
        except AssertionError:

            # handle timedelta dtypes
            if hasattr(targ, "dtype") and targ.dtype == "m8[ns]":
                raise

            # There are sometimes rounding errors with
            # complex and object dtypes.
            # If it isn't one of those, re-raise the error.
            if not hasattr(res, "dtype") or res.dtype.kind not in ["c", "O"]:
                raise
            # convert object dtypes to something that can be split into
            # real and imaginary parts
            if res.dtype.kind == "O":
                if targ.dtype.kind != "O":
                    res = res.astype(targ.dtype)
                else:
                    cast_dtype = "c16" if has_c16 else "f8"
                    res = res.astype(cast_dtype)
                    targ = targ.astype(cast_dtype)
            # there should never be a case where numpy returns an object
            # but nanops doesn't, so make that an exception
            elif targ.dtype.kind == "O":
                raise
            tm.assert_almost_equal(np.real(targ), np.real(res), check_dtype=check_dtype)
            tm.assert_almost_equal(np.imag(targ), np.imag(res), check_dtype=check_dtype)

    def check_fun_data(
        self,
        testfunc,
        targfunc,
        testarval,
        targarval,
        skipna,
        check_dtype=True,
        empty_targfunc=None,
        **kwargs,
    ):
        for axis in list(range(targarval.ndim)) + [None]:
            targartempval = targarval if skipna else testarval
            if skipna and empty_targfunc and isna(targartempval).all():
                targ = empty_targfunc(targartempval, axis=axis, **kwargs)
            else:
                targ = targfunc(targartempval, axis=axis, **kwargs)

            res = testfunc(testarval, axis=axis, skipna=skipna, **kwargs)
            self.check_results(targ, res, axis, check_dtype=check_dtype)
            if skipna:
                res = testfunc(testarval, axis=axis, **kwargs)
                self.check_results(targ, res, axis, check_dtype=check_dtype)
            if axis is None:
                res = testfunc(testarval, skipna=skipna, **kwargs)
                self.check_results(targ, res, axis, check_dtype=check_dtype)
            if skipna and axis is None:
                res = testfunc(testarval, **kwargs)
                self.check_results(targ, res, axis, check_dtype=check_dtype)

        if testarval.ndim <= 1:
            return

        # Recurse on lower-dimension
        testarval2 = np.take(testarval, 0, axis=-1)
        targarval2 = np.take(targarval, 0, axis=-1)
        self.check_fun_data(
            testfunc,
            targfunc,
            testarval2,
            targarval2,
            skipna=skipna,
            check_dtype=check_dtype,
            empty_targfunc=empty_targfunc,
            **kwargs,
        )

    def check_fun(
        self, testfunc, targfunc, testar, skipna, empty_targfunc=None, **kwargs
    ):

        targar = testar
        if testar.endswith("_nan") and hasattr(self, testar[:-4]):
            targar = testar[:-4]

        testarval = getattr(self, testar)
        targarval = getattr(self, targar)
        self.check_fun_data(
            testfunc,
            targfunc,
            testarval,
            targarval,
            skipna=skipna,
            empty_targfunc=empty_targfunc,
            **kwargs,
        )

    def check_funs(
        self,
        testfunc,
        targfunc,
        skipna,
        allow_complex=True,
        allow_all_nan=True,
        allow_date=True,
        allow_tdelta=True,
        allow_obj=True,
        **kwargs,
    ):
        self.check_fun(testfunc, targfunc, "arr_float", skipna, **kwargs)
        self.check_fun(testfunc, targfunc, "arr_float_nan", skipna, **kwargs)
        self.check_fun(testfunc, targfunc, "arr_int", skipna, **kwargs)
        self.check_fun(testfunc, targfunc, "arr_bool", skipna, **kwargs)
        objs = [
            self.arr_float.astype("O"),
            self.arr_int.astype("O"),
            self.arr_bool.astype("O"),
        ]

        if allow_all_nan:
            self.check_fun(testfunc, targfunc, "arr_nan", skipna, **kwargs)

        if allow_complex:
            self.check_fun(testfunc, targfunc, "arr_complex", skipna, **kwargs)
            self.check_fun(testfunc, targfunc, "arr_complex_nan", skipna, **kwargs)
            if allow_all_nan:
                self.check_fun(testfunc, targfunc, "arr_nan_nanj", skipna, **kwargs)
            objs += [self.arr_complex.astype("O")]

        if allow_date:
            targfunc(self.arr_date)
            self.check_fun(testfunc, targfunc, "arr_date", skipna, **kwargs)
            objs += [self.arr_date.astype("O")]

        if allow_tdelta:
            try:
                targfunc(self.arr_tdelta)
            except TypeError:
                pass
            else:
                self.check_fun(testfunc, targfunc, "arr_tdelta", skipna, **kwargs)
                objs += [self.arr_tdelta.astype("O")]

        if allow_obj:
            self.arr_obj = np.vstack(objs)
            # some nanops handle object dtypes better than their numpy
            # counterparts, so the numpy functions need to be given something
            # else
            if allow_obj == "convert":
                targfunc = partial(
                    self._badobj_wrap, func=targfunc, allow_complex=allow_complex
                )
            self.check_fun(testfunc, targfunc, "arr_obj", skipna, **kwargs)

    def _badobj_wrap(self, value, func, allow_complex=True, **kwargs):
        if value.dtype.kind == "O":
            if allow_complex:
                value = value.astype("c16")
            else:
                value = value.astype("f8")
        return func(value, **kwargs)

    @pytest.mark.parametrize(
        "nan_op,np_op", [(nanops.nanany, np.any), (nanops.nanall, np.all)]
    )
    def test_nan_funcs(self, nan_op, np_op, skipna):
        self.check_funs(nan_op, np_op, skipna, allow_all_nan=False, allow_date=False)

    def test_nansum(self, skipna):
        self.check_funs(
            nanops.nansum,
            np.sum,
            skipna,
            allow_date=False,
            check_dtype=False,
            empty_targfunc=np.nansum,
        )

    def test_nanmean(self, skipna):
        self.check_funs(
            nanops.nanmean, np.mean, skipna, allow_obj=False, allow_date=False,
        )

    def test_nanmean_overflow(self):
        # GH 10155
        # In the previous implementation mean can overflow for int dtypes, it
        # is now consistent with numpy

        for a in [2 ** 55, -(2 ** 55), 20150515061816532]:
            s = Series(a, index=range(500), dtype=np.int64)
            result = s.mean()
            np_result = s.values.mean()
            assert result == a
            assert result == np_result
            assert result.dtype == np.float64

    @pytest.mark.parametrize(
        "dtype",
        [
            np.int16,
            np.int32,
            np.int64,
            np.float32,
            np.float64,
            getattr(np, "float128", None),
        ],
    )
    def test_returned_dtype(self, dtype):
        if dtype is None:
            # no float128 available
            return

        s = Series(range(10), dtype=dtype)
        group_a = ["mean", "std", "var", "skew", "kurt"]
        group_b = ["min", "max"]
        for method in group_a + group_b:
            result = getattr(s, method)()
            if is_integer_dtype(dtype) and method in group_a:
                assert result.dtype == np.float64
            else:
                assert result.dtype == dtype

    def test_nanmedian(self, skipna):
        with warnings.catch_warnings(record=True):
            warnings.simplefilter("ignore", RuntimeWarning)
            self.check_funs(
                nanops.nanmedian,
                np.median,
                skipna,
                allow_complex=False,
                allow_date=False,
                allow_obj="convert",
            )

    @pytest.mark.parametrize("ddof", range(3))
    def test_nanvar(self, ddof, skipna):
        self.check_funs(
            nanops.nanvar,
            np.var,
            skipna,
            allow_complex=False,
            allow_date=False,
            allow_obj="convert",
            ddof=ddof,
        )

    @pytest.mark.parametrize("ddof", range(3))
    def test_nanstd(self, ddof, skipna):
        self.check_funs(
            nanops.nanstd,
            np.std,
            skipna,
            allow_complex=False,
            allow_date=False,
            allow_obj="convert",
            ddof=ddof,
        )

    @td.skip_if_no_scipy
    @pytest.mark.parametrize("ddof", range(3))
    def test_nansem(self, ddof, skipna):
        from scipy.stats import sem

        with np.errstate(invalid="ignore"):
            self.check_funs(
                nanops.nansem,
                sem,
                skipna,
                allow_complex=False,
                allow_date=False,
                allow_tdelta=False,
                allow_obj="convert",
                ddof=ddof,
            )

    @pytest.mark.parametrize(
        "nan_op,np_op", [(nanops.nanmin, np.min), (nanops.nanmax, np.max)]
    )
    def test_nanops_with_warnings(self, nan_op, np_op, skipna):
        with warnings.catch_warnings(record=True):
            warnings.simplefilter("ignore", RuntimeWarning)
            self.check_funs(nan_op, np_op, skipna, allow_obj=False)

    def _argminmax_wrap(self, value, axis=None, func=None):
        res = func(value, axis)
        nans = np.min(value, axis)
        nullnan = isna(nans)
        if res.ndim:
            res[nullnan] = -1
        elif (
            hasattr(nullnan, "all")
            and nullnan.all()
            or not hasattr(nullnan, "all")
            and nullnan
        ):
            res = -1
        return res

    def test_nanargmax(self, skipna):
        with warnings.catch_warnings(record=True):
            warnings.simplefilter("ignore", RuntimeWarning)
            func = partial(self._argminmax_wrap, func=np.argmax)
            self.check_funs(nanops.nanargmax, func, skipna, allow_obj=False)

    def test_nanargmin(self, skipna):
        with warnings.catch_warnings(record=True):
            warnings.simplefilter("ignore", RuntimeWarning)
            func = partial(self._argminmax_wrap, func=np.argmin)
            self.check_funs(nanops.nanargmin, func, skipna, allow_obj=False)

    def _skew_kurt_wrap(self, values, axis=None, func=None):
        if not isinstance(values.dtype.type, np.floating):
            values = values.astype("f8")
        result = func(values, axis=axis, bias=False)
        # fix for handling cases where all elements in an axis are the same
        if isinstance(result, np.ndarray):
            result[np.max(values, axis=axis) == np.min(values, axis=axis)] = 0
            return result
        elif np.max(values) == np.min(values):
            return 0.0
        return result

    @td.skip_if_no_scipy
    def test_nanskew(self, skipna):
        from scipy.stats import skew

        func = partial(self._skew_kurt_wrap, func=skew)
        with np.errstate(invalid="ignore"):
            self.check_funs(
                nanops.nanskew,
                func,
                skipna,
                allow_complex=False,
                allow_date=False,
                allow_tdelta=False,
            )

    @td.skip_if_no_scipy
    def test_nankurt(self, skipna):
        from scipy.stats import kurtosis

        func1 = partial(kurtosis, fisher=True)
        func = partial(self._skew_kurt_wrap, func=func1)
        with np.errstate(invalid="ignore"):
            self.check_funs(
                nanops.nankurt,
                func,
                skipna,
                allow_complex=False,
                allow_date=False,
                allow_tdelta=False,
            )

    def test_nanprod(self, skipna):
        self.check_funs(
            nanops.nanprod,
            np.prod,
            skipna,
            allow_date=False,
            allow_tdelta=False,
            empty_targfunc=np.nanprod,
        )

    def check_nancorr_nancov_2d(self, checkfun, targ0, targ1, **kwargs):
        res00 = checkfun(self.arr_float_2d, self.arr_float1_2d, **kwargs)
        res01 = checkfun(
            self.arr_float_2d,
            self.arr_float1_2d,
            min_periods=len(self.arr_float_2d) - 1,
            **kwargs,
        )
        tm.assert_almost_equal(targ0, res00)
        tm.assert_almost_equal(targ0, res01)

        res10 = checkfun(self.arr_float_nan_2d, self.arr_float1_nan_2d, **kwargs)
        res11 = checkfun(
            self.arr_float_nan_2d,
            self.arr_float1_nan_2d,
            min_periods=len(self.arr_float_2d) - 1,
            **kwargs,
        )
        tm.assert_almost_equal(targ1, res10)
        tm.assert_almost_equal(targ1, res11)

        targ2 = np.nan
        res20 = checkfun(self.arr_nan_2d, self.arr_float1_2d, **kwargs)
        res21 = checkfun(self.arr_float_2d, self.arr_nan_2d, **kwargs)
        res22 = checkfun(self.arr_nan_2d, self.arr_nan_2d, **kwargs)
        res23 = checkfun(self.arr_float_nan_2d, self.arr_nan_float1_2d, **kwargs)
        res24 = checkfun(
            self.arr_float_nan_2d,
            self.arr_nan_float1_2d,
            min_periods=len(self.arr_float_2d) - 1,
            **kwargs,
        )
        res25 = checkfun(
            self.arr_float_2d,
            self.arr_float1_2d,
            min_periods=len(self.arr_float_2d) + 1,
            **kwargs,
        )
        tm.assert_almost_equal(targ2, res20)
        tm.assert_almost_equal(targ2, res21)
        tm.assert_almost_equal(targ2, res22)
        tm.assert_almost_equal(targ2, res23)
        tm.assert_almost_equal(targ2, res24)
        tm.assert_almost_equal(targ2, res25)

    def check_nancorr_nancov_1d(self, checkfun, targ0, targ1, **kwargs):
        res00 = checkfun(self.arr_float_1d, self.arr_float1_1d, **kwargs)
        res01 = checkfun(
            self.arr_float_1d,
            self.arr_float1_1d,
            min_periods=len(self.arr_float_1d) - 1,
            **kwargs,
        )
        tm.assert_almost_equal(targ0, res00)
        tm.assert_almost_equal(targ0, res01)

        res10 = checkfun(self.arr_float_nan_1d, self.arr_float1_nan_1d, **kwargs)
        res11 = checkfun(
            self.arr_float_nan_1d,
            self.arr_float1_nan_1d,
            min_periods=len(self.arr_float_1d) - 1,
            **kwargs,
        )
        tm.assert_almost_equal(targ1, res10)
        tm.assert_almost_equal(targ1, res11)

        targ2 = np.nan
        res20 = checkfun(self.arr_nan_1d, self.arr_float1_1d, **kwargs)
        res21 = checkfun(self.arr_float_1d, self.arr_nan_1d, **kwargs)
        res22 = checkfun(self.arr_nan_1d, self.arr_nan_1d, **kwargs)
        res23 = checkfun(self.arr_float_nan_1d, self.arr_nan_float1_1d, **kwargs)
        res24 = checkfun(
            self.arr_float_nan_1d,
            self.arr_nan_float1_1d,
            min_periods=len(self.arr_float_1d) - 1,
            **kwargs,
        )
        res25 = checkfun(
            self.arr_float_1d,
            self.arr_float1_1d,
            min_periods=len(self.arr_float_1d) + 1,
            **kwargs,
        )
        tm.assert_almost_equal(targ2, res20)
        tm.assert_almost_equal(targ2, res21)
        tm.assert_almost_equal(targ2, res22)
        tm.assert_almost_equal(targ2, res23)
        tm.assert_almost_equal(targ2, res24)
        tm.assert_almost_equal(targ2, res25)

    def test_nancorr(self):
        targ0 = np.corrcoef(self.arr_float_2d, self.arr_float1_2d)[0, 1]
        targ1 = np.corrcoef(self.arr_float_2d.flat, self.arr_float1_2d.flat)[0, 1]
        self.check_nancorr_nancov_2d(nanops.nancorr, targ0, targ1)
        targ0 = np.corrcoef(self.arr_float_1d, self.arr_float1_1d)[0, 1]
        targ1 = np.corrcoef(self.arr_float_1d.flat, self.arr_float1_1d.flat)[0, 1]
        self.check_nancorr_nancov_1d(nanops.nancorr, targ0, targ1, method="pearson")

    def test_nancorr_pearson(self):
        targ0 = np.corrcoef(self.arr_float_2d, self.arr_float1_2d)[0, 1]
        targ1 = np.corrcoef(self.arr_float_2d.flat, self.arr_float1_2d.flat)[0, 1]
        self.check_nancorr_nancov_2d(nanops.nancorr, targ0, targ1, method="pearson")
        targ0 = np.corrcoef(self.arr_float_1d, self.arr_float1_1d)[0, 1]
        targ1 = np.corrcoef(self.arr_float_1d.flat, self.arr_float1_1d.flat)[0, 1]
        self.check_nancorr_nancov_1d(nanops.nancorr, targ0, targ1, method="pearson")

    @td.skip_if_no_scipy
    def test_nancorr_kendall(self):
        from scipy.stats import kendalltau

        targ0 = kendalltau(self.arr_float_2d, self.arr_float1_2d)[0]
        targ1 = kendalltau(self.arr_float_2d.flat, self.arr_float1_2d.flat)[0]
        self.check_nancorr_nancov_2d(nanops.nancorr, targ0, targ1, method="kendall")
        targ0 = kendalltau(self.arr_float_1d, self.arr_float1_1d)[0]
        targ1 = kendalltau(self.arr_float_1d.flat, self.arr_float1_1d.flat)[0]
        self.check_nancorr_nancov_1d(nanops.nancorr, targ0, targ1, method="kendall")

    @td.skip_if_no_scipy
    def test_nancorr_spearman(self):
        from scipy.stats import spearmanr

        targ0 = spearmanr(self.arr_float_2d, self.arr_float1_2d)[0]
        targ1 = spearmanr(self.arr_float_2d.flat, self.arr_float1_2d.flat)[0]
        self.check_nancorr_nancov_2d(nanops.nancorr, targ0, targ1, method="spearman")
        targ0 = spearmanr(self.arr_float_1d, self.arr_float1_1d)[0]
        targ1 = spearmanr(self.arr_float_1d.flat, self.arr_float1_1d.flat)[0]
        self.check_nancorr_nancov_1d(nanops.nancorr, targ0, targ1, method="spearman")

    @td.skip_if_no_scipy
    def test_invalid_method(self):
        targ0 = np.corrcoef(self.arr_float_2d, self.arr_float1_2d)[0, 1]
        targ1 = np.corrcoef(self.arr_float_2d.flat, self.arr_float1_2d.flat)[0, 1]
        msg = "Unknown method 'foo', expected one of 'kendall', 'spearman'"
        with pytest.raises(ValueError, match=msg):
            self.check_nancorr_nancov_1d(nanops.nancorr, targ0, targ1, method="foo")

    def test_nancov(self):
        targ0 = np.cov(self.arr_float_2d, self.arr_float1_2d)[0, 1]
        targ1 = np.cov(self.arr_float_2d.flat, self.arr_float1_2d.flat)[0, 1]
        self.check_nancorr_nancov_2d(nanops.nancov, targ0, targ1)
        targ0 = np.cov(self.arr_float_1d, self.arr_float1_1d)[0, 1]
        targ1 = np.cov(self.arr_float_1d.flat, self.arr_float1_1d.flat)[0, 1]
        self.check_nancorr_nancov_1d(nanops.nancov, targ0, targ1)

    def check_nancomp(self, checkfun, targ0):
        arr_float = self.arr_float
        arr_float1 = self.arr_float1
        arr_nan = self.arr_nan
        arr_nan_nan = self.arr_nan_nan
        arr_float_nan = self.arr_float_nan
        arr_float1_nan = self.arr_float1_nan
        arr_nan_float1 = self.arr_nan_float1

        while targ0.ndim:
            res0 = checkfun(arr_float, arr_float1)
            tm.assert_almost_equal(targ0, res0)

            if targ0.ndim > 1:
                targ1 = np.vstack([targ0, arr_nan])
            else:
                targ1 = np.hstack([targ0, arr_nan])
            res1 = checkfun(arr_float_nan, arr_float1_nan)
            tm.assert_numpy_array_equal(targ1, res1, check_dtype=False)

            targ2 = arr_nan_nan
            res2 = checkfun(arr_float_nan, arr_nan_float1)
            tm.assert_numpy_array_equal(targ2, res2, check_dtype=False)

            # Lower dimension for next step in the loop
            arr_float = np.take(arr_float, 0, axis=-1)
            arr_float1 = np.take(arr_float1, 0, axis=-1)
            arr_nan = np.take(arr_nan, 0, axis=-1)
            arr_nan_nan = np.take(arr_nan_nan, 0, axis=-1)
            arr_float_nan = np.take(arr_float_nan, 0, axis=-1)
            arr_float1_nan = np.take(arr_float1_nan, 0, axis=-1)
            arr_nan_float1 = np.take(arr_nan_float1, 0, axis=-1)
            targ0 = np.take(targ0, 0, axis=-1)

    @pytest.mark.parametrize(
        "op,nanop",
        [
            (operator.eq, nanops.naneq),
            (operator.ne, nanops.nanne),
            (operator.gt, nanops.nangt),
            (operator.ge, nanops.nange),
            (operator.lt, nanops.nanlt),
            (operator.le, nanops.nanle),
        ],
    )
    def test_nan_comparison(self, op, nanop):
        targ0 = op(self.arr_float, self.arr_float1)
        self.check_nancomp(nanop, targ0)

    def check_bool(self, func, value, correct):
        while getattr(value, "ndim", True):
            res0 = func(value)
            if correct:
                assert res0
            else:
                assert not res0

            if not hasattr(value, "ndim"):
                break

            # Reduce dimension for next step in the loop
            value = np.take(value, 0, axis=-1)

    def test__has_infs(self):
        pairs = [
            ("arr_complex", False),
            ("arr_int", False),
            ("arr_bool", False),
            ("arr_str", False),
            ("arr_utf", False),
            ("arr_complex", False),
            ("arr_complex_nan", False),
            ("arr_nan_nanj", False),
            ("arr_nan_infj", True),
            ("arr_complex_nan_infj", True),
        ]
        pairs_float = [
            ("arr_float", False),
            ("arr_nan", False),
            ("arr_float_nan", False),
            ("arr_nan_nan", False),
            ("arr_float_inf", True),
            ("arr_inf", True),
            ("arr_nan_inf", True),
            ("arr_float_nan_inf", True),
            ("arr_nan_nan_inf", True),
        ]

        for arr, correct in pairs:
            val = getattr(self, arr)
            self.check_bool(nanops._has_infs, val, correct)

        for arr, correct in pairs_float:
            val = getattr(self, arr)
            self.check_bool(nanops._has_infs, val, correct)
            self.check_bool(nanops._has_infs, val.astype("f4"), correct)
            self.check_bool(nanops._has_infs, val.astype("f2"), correct)

    def test__bn_ok_dtype(self):
        assert nanops._bn_ok_dtype(self.arr_float.dtype, "test")
        assert nanops._bn_ok_dtype(self.arr_complex.dtype, "test")
        assert nanops._bn_ok_dtype(self.arr_int.dtype, "test")
        assert nanops._bn_ok_dtype(self.arr_bool.dtype, "test")
        assert nanops._bn_ok_dtype(self.arr_str.dtype, "test")
        assert nanops._bn_ok_dtype(self.arr_utf.dtype, "test")
        assert not nanops._bn_ok_dtype(self.arr_date.dtype, "test")
        assert not nanops._bn_ok_dtype(self.arr_tdelta.dtype, "test")
        assert not nanops._bn_ok_dtype(self.arr_obj.dtype, "test")


class TestEnsureNumeric:
    def test_numeric_values(self):
        # Test integer
        assert nanops._ensure_numeric(1) == 1

        # Test float
        assert nanops._ensure_numeric(1.1) == 1.1

        # Test complex
        assert nanops._ensure_numeric(1 + 2j) == 1 + 2j

    def test_ndarray(self):
        # Test numeric ndarray
        values = np.array([1, 2, 3])
        assert np.allclose(nanops._ensure_numeric(values), values)

        # Test object ndarray
        o_values = values.astype(object)
        assert np.allclose(nanops._ensure_numeric(o_values), values)

        # Test convertible string ndarray
        s_values = np.array(["1", "2", "3"], dtype=object)
        assert np.allclose(nanops._ensure_numeric(s_values), values)

        # Test non-convertible string ndarray
        s_values = np.array(["foo", "bar", "baz"], dtype=object)
        msg = r"Could not convert .* to numeric"
        with pytest.raises(TypeError, match=msg):
            nanops._ensure_numeric(s_values)

    def test_convertable_values(self):
        assert np.allclose(nanops._ensure_numeric("1"), 1.0)
        assert np.allclose(nanops._ensure_numeric("1.1"), 1.1)
        assert np.allclose(nanops._ensure_numeric("1+1j"), 1 + 1j)

    def test_non_convertable_values(self):
        msg = "Could not convert foo to numeric"
        with pytest.raises(TypeError, match=msg):
            nanops._ensure_numeric("foo")

        # with the wrong type, python raises TypeError for us
        msg = "argument must be a string or a number"
        with pytest.raises(TypeError, match=msg):
            nanops._ensure_numeric({})
        with pytest.raises(TypeError, match=msg):
            nanops._ensure_numeric([])


class TestNanvarFixedValues:

    # xref GH10242

    def setup_method(self, method):
        # Samples from a normal distribution.
        self.variance = variance = 3.0
        self.samples = self.prng.normal(scale=variance ** 0.5, size=100000)

    def test_nanvar_all_finite(self):
        samples = self.samples
        actual_variance = nanops.nanvar(samples)
        tm.assert_almost_equal(actual_variance, self.variance, rtol=1e-2)

    def test_nanvar_nans(self):
        samples = np.nan * np.ones(2 * self.samples.shape[0])
        samples[::2] = self.samples

        actual_variance = nanops.nanvar(samples, skipna=True)
        tm.assert_almost_equal(actual_variance, self.variance, rtol=1e-2)

        actual_variance = nanops.nanvar(samples, skipna=False)
        tm.assert_almost_equal(actual_variance, np.nan, rtol=1e-2)

    def test_nanstd_nans(self):
        samples = np.nan * np.ones(2 * self.samples.shape[0])
        samples[::2] = self.samples

        actual_std = nanops.nanstd(samples, skipna=True)
        tm.assert_almost_equal(actual_std, self.variance ** 0.5, rtol=1e-2)

        actual_std = nanops.nanvar(samples, skipna=False)
        tm.assert_almost_equal(actual_std, np.nan, rtol=1e-2)

    def test_nanvar_axis(self):
        # Generate some sample data.
        samples_norm = self.samples
        samples_unif = self.prng.uniform(size=samples_norm.shape[0])
        samples = np.vstack([samples_norm, samples_unif])

        actual_variance = nanops.nanvar(samples, axis=1)
        tm.assert_almost_equal(
            actual_variance, np.array([self.variance, 1.0 / 12]), rtol=1e-2
        )

    def test_nanvar_ddof(self):
        n = 5
        samples = self.prng.uniform(size=(10000, n + 1))
        samples[:, -1] = np.nan  # Force use of our own algorithm.

        variance_0 = nanops.nanvar(samples, axis=1, skipna=True, ddof=0).mean()
        variance_1 = nanops.nanvar(samples, axis=1, skipna=True, ddof=1).mean()
        variance_2 = nanops.nanvar(samples, axis=1, skipna=True, ddof=2).mean()

        # The unbiased estimate.
        var = 1.0 / 12
        tm.assert_almost_equal(variance_1, var, rtol=1e-2)

        # The underestimated variance.
        tm.assert_almost_equal(variance_0, (n - 1.0) / n * var, rtol=1e-2)

        # The overestimated variance.
        tm.assert_almost_equal(variance_2, (n - 1.0) / (n - 2.0) * var, rtol=1e-2)

    def test_ground_truth(self):
        # Test against values that were precomputed with Numpy.
        samples = np.empty((4, 4))
        samples[:3, :3] = np.array(
            [
                [0.97303362, 0.21869576, 0.55560287],
                [0.72980153, 0.03109364, 0.99155171],
                [0.09317602, 0.60078248, 0.15871292],
            ]
        )
        samples[3] = samples[:, 3] = np.nan

        # Actual variances along axis=0, 1 for ddof=0, 1, 2
        variance = np.array(
            [
                [
                    [0.13762259, 0.05619224, 0.11568816],
                    [0.20643388, 0.08428837, 0.17353224],
                    [0.41286776, 0.16857673, 0.34706449],
                ],
                [
                    [0.09519783, 0.16435395, 0.05082054],
                    [0.14279674, 0.24653093, 0.07623082],
                    [0.28559348, 0.49306186, 0.15246163],
                ],
            ]
        )

        # Test nanvar.
        for axis in range(2):
            for ddof in range(3):
                var = nanops.nanvar(samples, skipna=True, axis=axis, ddof=ddof)
                tm.assert_almost_equal(var[:3], variance[axis, ddof])
                assert np.isnan(var[3])

        # Test nanstd.
        for axis in range(2):
            for ddof in range(3):
                std = nanops.nanstd(samples, skipna=True, axis=axis, ddof=ddof)
                tm.assert_almost_equal(std[:3], variance[axis, ddof] ** 0.5)
                assert np.isnan(std[3])

    def test_nanstd_roundoff(self):
        # Regression test for GH 10242 (test data taken from GH 10489). Ensure
        # that variance is stable.
        data = Series(766897346 * np.ones(10))
        for ddof in range(3):
            result = data.std(ddof=ddof)
            assert result == 0.0

    @property
    def prng(self):
        return np.random.RandomState(1234)


class TestNanskewFixedValues:

    # xref GH 11974

    def setup_method(self, method):
        # Test data + skewness value (computed with scipy.stats.skew)
        self.samples = np.sin(np.linspace(0, 1, 200))
        self.actual_skew = -0.1875895205961754

    def test_constant_series(self):
        # xref GH 11974
        for val in [3075.2, 3075.3, 3075.5]:
            data = val * np.ones(300)
            skew = nanops.nanskew(data)
            assert skew == 0.0

    def test_all_finite(self):
        alpha, beta = 0.3, 0.1
        left_tailed = self.prng.beta(alpha, beta, size=100)
        assert nanops.nanskew(left_tailed) < 0

        alpha, beta = 0.1, 0.3
        right_tailed = self.prng.beta(alpha, beta, size=100)
        assert nanops.nanskew(right_tailed) > 0

    def test_ground_truth(self):
        skew = nanops.nanskew(self.samples)
        tm.assert_almost_equal(skew, self.actual_skew)

    def test_axis(self):
        samples = np.vstack([self.samples, np.nan * np.ones(len(self.samples))])
        skew = nanops.nanskew(samples, axis=1)
        tm.assert_almost_equal(skew, np.array([self.actual_skew, np.nan]))

    def test_nans(self):
        samples = np.hstack([self.samples, np.nan])
        skew = nanops.nanskew(samples, skipna=False)
        assert np.isnan(skew)

    def test_nans_skipna(self):
        samples = np.hstack([self.samples, np.nan])
        skew = nanops.nanskew(samples, skipna=True)
        tm.assert_almost_equal(skew, self.actual_skew)

    @property
    def prng(self):
        return np.random.RandomState(1234)


class TestNankurtFixedValues:

    # xref GH 11974

    def setup_method(self, method):
        # Test data + kurtosis value (computed with scipy.stats.kurtosis)
        self.samples = np.sin(np.linspace(0, 1, 200))
        self.actual_kurt = -1.2058303433799713

    def test_constant_series(self):
        # xref GH 11974
        for val in [3075.2, 3075.3, 3075.5]:
            data = val * np.ones(300)
            kurt = nanops.nankurt(data)
            assert kurt == 0.0

    def test_all_finite(self):
        alpha, beta = 0.3, 0.1
        left_tailed = self.prng.beta(alpha, beta, size=100)
        assert nanops.nankurt(left_tailed) < 0

        alpha, beta = 0.1, 0.3
        right_tailed = self.prng.beta(alpha, beta, size=100)
        assert nanops.nankurt(right_tailed) > 0

    def test_ground_truth(self):
        kurt = nanops.nankurt(self.samples)
        tm.assert_almost_equal(kurt, self.actual_kurt)

    def test_axis(self):
        samples = np.vstack([self.samples, np.nan * np.ones(len(self.samples))])
        kurt = nanops.nankurt(samples, axis=1)
        tm.assert_almost_equal(kurt, np.array([self.actual_kurt, np.nan]))

    def test_nans(self):
        samples = np.hstack([self.samples, np.nan])
        kurt = nanops.nankurt(samples, skipna=False)
        assert np.isnan(kurt)

    def test_nans_skipna(self):
        samples = np.hstack([self.samples, np.nan])
        kurt = nanops.nankurt(samples, skipna=True)
        tm.assert_almost_equal(kurt, self.actual_kurt)

    @property
    def prng(self):
        return np.random.RandomState(1234)


class TestDatetime64NaNOps:
    @pytest.mark.parametrize("tz", [None, "UTC"])
    # Enabling mean changes the behavior of DataFrame.mean
    # See https://github.com/pandas-dev/pandas/issues/24752
    def test_nanmean(self, tz):
        dti = pd.date_range("2016-01-01", periods=3, tz=tz)
        expected = dti[1]

        for obj in [dti, DatetimeArray(dti), Series(dti)]:
            result = nanops.nanmean(obj)
            assert result == expected

        dti2 = dti.insert(1, pd.NaT)

        for obj in [dti2, DatetimeArray(dti2), Series(dti2)]:
            result = nanops.nanmean(obj)
            assert result == expected


def test_use_bottleneck():

    if nanops._BOTTLENECK_INSTALLED:

        pd.set_option("use_bottleneck", True)
        assert pd.get_option("use_bottleneck")

        pd.set_option("use_bottleneck", False)
        assert not pd.get_option("use_bottleneck")

        pd.set_option("use_bottleneck", use_bn)


@pytest.mark.parametrize(
    "numpy_op, expected",
    [
        (np.sum, 10),
        (np.nansum, 10),
        (np.mean, 2.5),
        (np.nanmean, 2.5),
        (np.median, 2.5),
        (np.nanmedian, 2.5),
        (np.min, 1),
        (np.max, 4),
        (np.nanmin, 1),
        (np.nanmax, 4),
    ],
)
def test_numpy_ops(numpy_op, expected):
    # GH8383
    result = numpy_op(pd.Series([1, 2, 3, 4]))
    assert result == expected


@pytest.mark.parametrize(
    "operation",
    [
        nanops.nanany,
        nanops.nanall,
        nanops.nansum,
        nanops.nanmean,
        nanops.nanmedian,
        nanops.nanstd,
        nanops.nanvar,
        nanops.nansem,
        nanops.nanargmax,
        nanops.nanargmin,
        nanops.nanmax,
        nanops.nanmin,
        nanops.nanskew,
        nanops.nankurt,
        nanops.nanprod,
    ],
)
def test_nanops_independent_of_mask_param(operation):
    # GH22764
    s = pd.Series([1, 2, np.nan, 3, np.nan, 4])
    mask = s.isna()
    median_expected = operation(s)
    median_result = operation(s, mask=mask)
    assert median_expected == median_result